#include "PixelariumCzi.hpp" #include #include #include "libCZI.h" std::unique_ptr CZISubBlockToCvMat(std::shared_ptr bitmap, libCZI::PixelType pixeltype) { size_t pixel_size{0}; int target_type; switch (pixeltype) { case libCZI::PixelType::Gray8: pixel_size = 1; target_type = CV_8U; break; case libCZI::PixelType::Gray16: pixel_size = 2; target_type = CV_16U; break; case libCZI::PixelType::Bgr24: pixel_size = 3; target_type = CV_8UC3; break; case libCZI::PixelType::Bgra32: target_type = CV_8UC4; case libCZI::PixelType::Gray32: target_type = CV_32S; case libCZI::PixelType::Gray32Float: target_type = CV_32F; pixel_size = 4; break; // case libCZI::PixelType::Gray64ComplexFloat: // case libCZI::PixelType::Gray64Float: // target_type = // pixel_size = 8; // break; default: pixel_size = -1; break; } if (pixel_size < 0) return nullptr; size_t height{bitmap->GetHeight()}; size_t width{bitmap->GetWidth()}; auto fill_mat = std::make_unique(height, width, target_type); auto bitmap_info = bitmap->Lock(); for (size_t h{0}; h < height; ++h) { unsigned char* source_row = ((unsigned char*)bitmap_info.ptrDataRoi) + bitmap_info.stride * h; unsigned char* target_row = fill_mat->ptr(h); for (size_t w{0}; w < width; ++w) { switch (pixel_size) { case 1: target_row[w] = source_row[w]; break; case 2: reinterpret_cast(target_row)[w] = reinterpret_cast(source_row)[w]; break; case 3: target_row[3 * w] = source_row[3 * w]; target_row[3 * w + 1] = source_row[3 * w + 1]; target_row[3 * w + 2] = source_row[3 * w + 2]; break; default: throw std::runtime_error("Unknown pixel type requested!"); break; } } } bitmap->Unlock(); return fill_mat; } pixelarium::imaging::PixelariumCzi::PixelariumCzi(const std::string& uri) { if (!std::filesystem::exists(uri)) { throw std::runtime_error("Render file not found."); } this->is_empty_ = false; this->uri_ = std::filesystem::path(uri); } std::unique_ptr pixelarium::imaging::PixelariumCzi::TryGetImage() { auto stream = libCZI::CreateStreamFromFile(this->uri_.wstring().c_str()); auto cziReader = libCZI::CreateCZIReader(); cziReader->Open(stream); auto block = cziReader->ReadSubBlock(0); auto bitmap = block->CreateBitmap(); auto res = CZISubBlockToCvMat(bitmap, block->GetSubBlockInfo().pixelType); return res; }