Atomic woes, megalinter, and batches (#13)

* fix libCZI dependency w/ atomic woes

* add megalinter

* fix megalinter triggers

* use correct flavor

* build status in readme

* clang-format

* megalinter batch

* disable suggestions

set libCZI options before fetching

Set compile definitions for static libCZI

lib/imaging/CMakeLists.txt

@@ -22,6 +22,8 @@ set(IMAGELIBLIBNAME pixelariumimagelib)
 add_library(${IMAGELIBLIBNAME}
   STATIC ${IMAGELIBSRC})
 
+target_compile_definitions(${IMAGELIBLIBNAME} PUBLIC _LIBCZISTATICLIB)
+
 target_link_libraries(${IMAGELIBLIBNAME}
   PUBLIC ${OpenCV_LIBS}
   PUBLIC pixelariumutilslib

lib/imaging/IPixelariumImage.hpp

@@ -46,7 +46,7 @@ class IPixelariumImage
     virtual std::unique_ptr<cv::Mat> TryGetImage() = 0;
 
     /// @brief Attempts to retrieve the image.
-    /// @param query The query object defining the images to retrieve./// 
+    /// @param query The query object defining the images to retrieve.
     /// @return A unique pointer to a Mat object containing the image data,
     /// or nullptr if the image is not found or cannot be retrieved.
     virtual std::unique_ptr<cv::Mat> TryGetImage(const IImageQuery& query) = 0;

lib/imaging/PixelariumImageFactory.cpp

@@ -7,7 +7,6 @@
 #include "impl/PixelariumJpg.hpp"
 #include "impl/PixelariumPng.hpp"
 
-
 /*static*/ std::unique_ptr<pixelarium::imaging::IPixelariumImage>
 pixelarium::imaging::PixelariumImageFactory::CreateImage(const std::string& uri, const Log& log)
 {

lib/imaging/impl/PixelariumCzi.cpp

@@ -29,7 +29,6 @@ bool comp_blockinfo_params(const pixelarium::imaging::CziParams& params, const l
     return res;
 }
 
-
 constexpr int try_get_index_match(const pixelarium::imaging::CziParams& params, libCZI::ICZIReader& reader)
 {
     int index{-1};

lib/imaging/impl/PixelariumCzi.hpp

@@ -4,8 +4,8 @@
 #include <string>
 
 #include "../IPixelariumImage.hpp"
-#include "utilities/ILog.hpp"
 #include "libCZI.h"
+#include "utilities/ILog.hpp"
 
 namespace pixelarium::imaging
 {
@@ -21,12 +21,12 @@ struct CziParams : public IImageQuery
 class PixelariumCzi : public IPixelariumImage
 {
     using Log = pixelarium::utils::log::ILog;
+
    public:
     explicit PixelariumCzi(const std::string& uri, const Log& log);
     ~PixelariumCzi()
     {
-        if (this->czi_reader_)
-            this->czi_reader_->Close();
+        if (this->czi_reader_) this->czi_reader_->Close();
     }
 
     // IPixelariumImage member implementations