Czi rendering (#10)

* add dimension selector sliders to czi view

* version doc & version bump

* cosmetic

* fix build?

* multi-dimension selection enabled in czi view

* remove the parameterized reset function of the renderer

it is not and is conceptually questionable

doc updates & some minor improvements

auto-update CZI-view when sliders are moved

set initial window size

fix windows build and msvc build

For reasons I don not comprehend, on Windows, we must include
=opencv2/core/mat.hpp= as the very last header in the =CvMatRender.hpp=.
If this is at any other position building on Windows, compilation will
break w/ all kinds of cryptic errors regarding OpenCV.

When building w/ msvc =__PRETTY_FUNCTION__= is not defined. =ILog.hpp=
now defines it. This should be revised to only be set when the
compiler is msvc. For the time being, it is considered sufficient though.
This commit is contained in:
m-aXimilian
2025-09-26 21:09:51 +02:00
committed by Maximilian Kueffner
parent e60203b57d
commit 1ea83d9d11
27 changed files with 282 additions and 106 deletions
+16 -7
View File
@@ -4,19 +4,25 @@
#include <string>
#include "../IPixelariumImage.hpp"
#include "utilities/ILog.hpp"
#include "libCZI.h"
namespace pixelarium::imaging
{
/// @brief An implementation of IImageQuery to work on CZI images.
/// @note Check the documentation here https://zeiss.github.io/libczi/pages/mainpage.html#czi-in-a-nutshell
struct CziParams : public IImageQuery
{
/// @brief A map providing the start coordinate for each dimension in the CZI
std::unordered_map<libCZI::DimensionIndex, int> dimension_map;
};
/// @brief Implements support for .czi-images in the realm of IPixelariumImage
class PixelariumCzi : public IPixelariumImage
{
using Log = pixelarium::utils::log::ILog;
public:
explicit PixelariumCzi(const std::string& uri);
explicit PixelariumCzi(const std::string& uri, const Log& log);
~PixelariumCzi()
{
if (this->czi_reader_)
@@ -27,11 +33,7 @@ class PixelariumCzi : public IPixelariumImage
public:
std::unique_ptr<cv::Mat> TryGetImage() override;
std::unique_ptr<cv::Mat> TryGetImage(const IImageQuery&) override
{
// ToDo: proper error
throw std::runtime_error("Not implemented.");
}
std::unique_ptr<cv::Mat> TryGetImage(const IImageQuery&) override;
std::vector<std::unique_ptr<cv::Mat>> TryGetImages(const IImageQuery&) override
{
@@ -46,6 +48,9 @@ class PixelariumCzi : public IPixelariumImage
public:
const static ImageFileType type_{ImageFileType::CZI};
private:
std::unique_ptr<cv::Mat> SubblockToCvMat(int index);
private:
// this should be set by each image getter
// after a new cv::Mat could be instantiated
@@ -54,5 +59,9 @@ class PixelariumCzi : public IPixelariumImage
libCZI::SubBlockStatistics image_statistics_;
std::shared_ptr<libCZI::ICZIReader> czi_reader_;
std::unordered_map<libCZI::DimensionIndex, int> dimension_map_;
const Log& log_;
};
} // namespace pixelarium::imaging